NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187780_10066435

Scaffold Ga0187780_10066435


Overview

Basic Information
Taxon OID3300017973 Open in IMG/M
Scaffold IDGa0187780_10066435 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2480
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001778Metagenome / Metatranscriptome636Y
F025572Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0187780_100664351F025572GGAGGMTTPGPAAQASTTVNAQDVRVSSLGPHAGQAEAHAVVPGLGNVTATSVTVPPSASQELLVVVTGLSLTTATPAVVLVQPRQAVNQNMGWSDEYAVQVITTSKTEIQVLVRRLDLNSGWGQNLRLDLFIVD
Ga0187780_100664354F001778AGGMFRFGRDGRRIVPLTPKPGPPRELPGTIEDLTGSFRELNKKRDRLAGDVDKLRRCLAEAEGELDRLQLSWWPWQPDDKPRLELYWDELCTHLSVVSSELDATEASIGAIRAALVRQYAVAQASPQPVEALTVPCPACGQPSVPQRAAAVGRGWRKGWYECRADECDTAWSARWSGGAQPVVRVGF
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