NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187777_10002666

Scaffold Ga0187777_10002666


Overview

Basic Information
Taxon OID3300017974 Open in IMG/M
Scaffold IDGa0187777_10002666 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11360
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007704Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0187777_1000266611F007704GGAGMNLLALAVFATIDETAIDALKHAAATCDPHYECGGVVRKVDGGYEASVLTTSYKPFGVDLGELYGSDVVADFHTHICSVHNKPFADFFSPADAIANQGLHTVGYMLSLCDRNIRRYDPSQDDADDEEVDFQSGRVIYLTIGHIVGWAPPTLEFDERFADLGLRRVVDTSRDSSAYSEGSGGALR
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