NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187777_10241682

Scaffold Ga0187777_10241682


Overview

Basic Information
Taxon OID3300017974 Open in IMG/M
Scaffold IDGa0187777_10241682 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1224
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009163Metagenome / Metatranscriptome322Y
F013461Metagenome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0187777_102416821F009163N/AIEYRVTVMSFVQAQAEGATILGEREYMFQDGKKVLADTFARVGSGRGTVYGRKITVDLPDNKGRSTGVFYFTKGKLIVLEATVLPAHGNFASPEAGRFVDSIAFALSPAQSDVVELQTPKFE
Ga0187777_102416823F013461GGAGGMSGRGGSFRGSVVAGAVYLAGGLSFSAMAQDEPPNFAPNRNVGWYAYNRLFIPPATGAGPVQQDPARPYVSNDEFRVTGRQPTERVADLNTTILQPWARDAVRKRNEAVLSGKLIGTPT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.