NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187777_10280130

Scaffold Ga0187777_10280130


Overview

Basic Information
Taxon OID3300017974 Open in IMG/M
Scaffold IDGa0187777_10280130 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012935Metagenome / Metatranscriptome276Y
F052743Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0187777_102801301F052743GGCGGVKRDGPADAGGGSLPSGEAGGAPGSEREMELIMTDQERAVESAAPTSPYLALRRAVRPAILAHSLLAGDQERAGKLAAECDDLLFLTRELLKAAGRTRILAARPTPKMPDAGQEGGDRPAQFLEAYTEAGLLWAKVVGSSLALAGALIGRGEWDDVSRLASFLADAGEESAAADLRIRLGKLIWATHREQLQSISNTMPASAIGAAITSLRAVLRDVPAE
Ga0187777_102801302F012935N/AAGMHRWHELLAEGDYGRSSQTSARRVLLADKGPDAGIHVVAWTDGYVTAERALRRAGIGYFGLRAVLRVLSPAESDSLLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSIASLTAFAKENFGCVSEPVGRGAAWTVFVPPNPSQEQARSDEGRRRR
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