NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187782_10005225

Scaffold Ga0187782_10005225


Overview

Basic Information
Taxon OID3300017975 Open in IMG/M
Scaffold IDGa0187782_10005225 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9659
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008315Metagenome / Metatranscriptome335Y
F022912Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0187782_100052251F022912N/ASSDGSTNINALLEGQFSDNGAAINSYYTTAYLASTGPSGRNLFGYLTGFVQGAGSLTLQSFSPGDVNVTQLGSWTLASPAFRDMEQFINVLAERISFQFGTSAAGSWFSLTKLVPWAKPDPFAIVRGTN
Ga0187782_1000522510F008315N/AMREFVEPYWWTVALASLVQLVFFLRWVYRRIRNEEIMRVFVQDMATNHLPHIYFLLEKLCDQQGIKRTHAPHIRWIDLNGRQH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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