NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10102701

Scaffold Ga0180431_10102701


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10102701 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2356
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015211Metagenome / Metatranscriptome256Y
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0180431_101027011F015211N/AMPINDITYRQGIRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTAAAPGTVVDPTQLRITLIINNDVVI
Ga0180431_101027012F025285AGGAGMQGQQTTRYIYDTVNASAAGATFYNFFQTFAGKTEFETNLTTNKLDSSESMVIKSIYLTIDAGTAGTLDLSGHMNLNITVGNQVVLKDFNPAFNATNRGVSFDRLHSGYPDARFIEVRLLTDIIIPPQVNFKATLELAETDAVADTSITLGFKGYGVIFSAGNTF
Ga0180431_101027013F015342N/AMAITSNMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSTTSALQHTLFEGAAGRSFPLTNLGANGNQFQVDEALLVEKIGFFLPDAEDGQNFTAAIDLSYKFDLIIGNKTVMKDVVVEFAGQQAFYNDGGSGSTVLDLEGVGILIPPQVEFKIVVKPMGTRSRVNSSGRVGCYLFGTGVLLNFNTSI
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