NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10253990

Scaffold Ga0180431_10253990


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10253990 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y
F091957Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0180431_102539901F091957N/AMRGNTTAINVATLRLQWSSHSSMASICSFWTISRDQLIRLRDVHRLPKRHDRTKRRKPEREPEPSRAELRASEATLDLAPRIAKQAALVQARWSDAVRENRHWRKPQLFSVPLVQVDIEPDDEADL
Ga0180431_102539902F021885AGGAGMNIFEKLRLLAEWSPLLTFAQQLAAEDDIHAKAVIVADAMEWVASRTEIEWDDELASHISDILVSEEGEAFVRWILDRMQVTDAE
Ga0180431_102539903F049303AGGMLNDPVRIFAVVAAVAVLVVPYLPALAKQLRAAWSSMPSVPTAKGDGISVSDLTTVLDLANRLRVSGNEKATDLAKQLLDAMLEVPQK
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