NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10010618

Scaffold Ga0181520_10010618


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10010618 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12295
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100106182F004301AGGMAIAHKLAPLRDSTTAMQFSLFNAQPVAATVDPELSINARNAKRQLDTLRSQLATAQADLEEVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDLDEQHAYRLGSYPVKVTRWIRHLIFTLHAERRDVQLAIAELEPKVAALSQIIGDAIK
Ga0181520_100106183F003764GAGMQIQNDSAYVPDENPAALLAGAESEAAALYRCLKIVRLWKQSSAMPRSRHDEMIEEGQRLANLYAATLFEIGCAFGIETADELKASIEAACILNPWECPPAEQELLFSIPSDAAAAANPATARK
Ga0181520_100106185F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWESGKTLLNIFSPLDGNVLGFPHDRLHRDNISAVGPKLPDGTTAQPGMAEAIEIQRQAGHALYADHLSAMLYGTGPNPARS
Ga0181520_100106186F003389AGGMQITVWTVAADHDNGTFASVHETELAAYRRLIELTVDSNDKDQVAKAEAFIEAEDLDGLDKWIHAEVIEPLNTYSVEQHKLDVPAASDPAPAVENKHITRRELASVLHGLRLMQEQWEPQMRGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSATEIDELCDRLNMGFCN
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