NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10010723

Scaffold Ga0181520_10010723


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10010723 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12204
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F006579Metagenome / Metatranscriptome369Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_1001072310F003764GAGMQIQEDSTYVLDENPAALLAGAEIDAAALHRCLKIVRLWSQSSALSLSKSKPRRDEMVEEEKRLANLYAATLLEIGCAFGVELADELKVRIEAACNLDPWECPPAEQGFLFPILSESANAASPARARK
Ga0181520_1001072311F004301GGAGMTAMQFSLFNAPPRVCTVDAEPSVNARNAKRQLDTLRSQLATAQADLEDVNYNLSVVTMHQQASRQGKIDANWWDAAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQSSIAELEQKVAALSQIIGDAIK
Ga0181520_1001072312F017951GGAMAIAHKFETAGLGTAPFRLVRVEMRWFSIPGVPGSKKPGSSCMYCGHPIAECCFLHDANDKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADKAAAIFREGRDILARPEIHASLSIQPHPNSYFAAKGKTMADYYEFLLHNSPRGTVANLVGKLREIATEPMQ
Ga0181520_100107235F006579AGGAGGMTPKDVSSTIPRNPDYILELMQLPAFQNLLAKVETNFYRNRPKEAAELELEGTIRFTLQERAAQAWEILAKARSTGLPMDQAQELISELVYPPLESDDN
Ga0181520_100107237F003389AGGMQITVWSVAADDDNGTYASVHETELAAYRHLIELTVDSNDKDQVAKAEALIEAEDFDGLDEWIHEEVIEPLNTYSVDQHKLDVPAASDPAPAVENKPITRRELASVLHGLRLMQEQWEPQMHGCTSIDLHDPLELSEPNSCDHFCDEEDSPLSATEIDDLCERLNMGLCN
Ga0181520_100107238F003942GGAGMLGHRLNPAIHRYEDVELIEVHSEYLECSFLVAKDEWETGKTLLNLFSPLDGIVLGFPHYRLHRDNISAAGPKLPGGATAQPGMAEAIELQRQAGHALYADHLSAMLYGTGPNTARS
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