NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181520_10012782

Scaffold Ga0181520_10012782


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10012782 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10729
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003942Metagenome460N
F026179Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100127821F026179AGGAGGMTPNDASSTIPCDPDYISGLMQLPAFQNLLAKVETN
Ga0181520_1001278210F003389GGAMQITVWSVAADDDNGTYASVHETEDAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWVHEEVIEALKTYSVEQQTLELSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPNEIDELCERLNMEFCN
Ga0181520_1001278211F003942N/APTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKTLLTIFSPLDGNVLGFPHYRLNRDNISAAGPKLPDGTTAQPGMAEAIEMQRHAGHAIYADHLSAMLYGTGLNPARS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.