NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10064996

Scaffold Ga0181520_10064996


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10064996 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3330
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100649962F003389AGGMQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEAEDLDGLEEWIHAEVIEPLNTYSVDQHKLDVPAASDPAPAGENKHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDPPLSPTEIDDLCERLNMGLCN
Ga0181520_100649963F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWETGKTLLNLFSPLDGNVLGFPHYRLHRDNISTAGPKLPDGTTAQPGMAEAIEHQRQAGHALYADHLSAMLYGTGPNPARS
Ga0181520_100649965F003764GAGMQIKEDSTYVLDENPAALLTGAEIEAAALHRCLKIVRLWSQSSALSQSRHDEMIEEEQRIANLYAATLLEIGCAFGIEKADDLKVRIEAACILDPWECPPAEQGFLFPILSDLVTAASPARARK
Ga0181520_100649966F004301GGAGMTAMQFSLFNAQPQIATVDTQPSVNARNAKRQLDTLRSQLATAQANLEDVNYNLSVVTMHQRASREGKINANWWDAAMRFGMLDLDEEPSYRLGSYPVKVMRWIRHLIFTLHAERRDVQSGIAELEQTVAALSQIIGDAIK
Ga0181520_100649967F017951N/AMAIAHKFETAGLGAAPFRLVRIEMRWFSIPGIPGSKRPGSSCMYCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEANFAAATFREGRDILARPEIHASLSTQPHPNSYFAAKGKTMPDYYEFLLHNSPRGSVANLVGKLREIATEPMQ
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