NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10126893

Scaffold Ga0181520_10126893


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10126893 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_101268933F007212N/AMPDWPTIDAAANAVMQQTFGEPVVYQSVQAGVAVGDPVTITAIRHARVREESGALANVEEISVNPSDLVGFPQRGDWVTAWGSQFVVTTVRQPDPYGLVEISLMARAGQNSDD
Ga0181520_101268934F002448N/AMTNPKTILAEWVTALQALPNLVDALGGDGSYIQFYTENTVVFGQPTQNNIRLAILSMPPGSIMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGSSLRMLHTAIDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLIESYNP
Ga0181520_101268935F010139GAGGMADMVFLRSPQGDEIKEVEATAEKLSPWMSSGWHQVPASAAVQKPVVVAEEEKQHGEHQ
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