NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10473044

Scaffold Ga0181520_10473044


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10473044 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N
F075559Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_104730441F038518N/AEEVDYNLSIVGMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLCSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0181520_104730442F003764GAGMHIQLDNPYAHDENPAALLAGAEIEAAGLHRCLKIVRLWIQSSALSTPRREEIIEEEQRLASLYASILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNEPTTEANPATARK
Ga0181520_104730443F075559GAGMETIREVNPARLAWGTYDDEKNDYVSEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVAIGLSNHGAKAYRLC
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