Basic Information | |
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Taxon OID | 3300017990 Open in IMG/M |
Scaffold ID | Ga0180436_10375208 Open in IMG/M |
Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1043 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.3 | Long. (o) | -115.8 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021885 | Metagenome / Metatranscriptome | 217 | Y |
F049303 | Metagenome / Metatranscriptome | 147 | Y |
F091957 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0180436_103752081 | F049303 | AGG | MQTLLNDPVRVLAVIAAAAVLVVPYLPAIAKRLRAAWASLPTVPQPSKDGIGVSDLTMVLDLANRLRLDGHEKATELAKQLLDAMLEVPQK |
Ga0180436_103752082 | F021885 | AGGAG | MNIFEKLKLLAEWSPLLTFAQRLAAEDDMHAKAVIVTEAMEWVADRTSVEWDDELASHISDILVSEEGEAFVRWILERMQVSDADTAE |
Ga0180436_103752083 | F091957 | GAGG | MRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHQLPKRHNRSLRRKPEREPEPSRAEQRASEGSLDLAPRVAKRAAAVRATWSENIRQHRHYSSASVFEVPIVQVEIEPEEDMEF |
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