NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180435_10069351

Scaffold Ga0180435_10069351


Overview

Basic Information
Taxon OID3300017992 Open in IMG/M
Scaffold IDGa0180435_10069351 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2973
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019640Metagenome228N
F027166Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0180435_100693512F019640AGAAGMSYTEQSLVYLSRDYRVTASFGAVGASASAGGAVITDNDDEQLTDAELNTGAIYQEVFTASGSATFTVTENNGQLPDVTTDINVYRNGLLLNDSYIASHSAVDSTLTLTFIPDTGDRISIVWYGRGEITNNGIYQQIFTPTGSSAEFTCTENSGIIPSRKQEMFVYVNGIFLDIDKISEYNPQESKFTLDFTPDPTDSIAATWFDSFPNNIKVVQETFSADGTQTTFTVTKNGGKLAKVKDAILLMRNGQHINNDYITGINPTSGTITLTFAPDQGDDITLIWFVEEFVTPSNSAAVSMFQEEFTADGLTPTFTVTENEGKLPDSLSAIMVYRNGQFISNQFISSHDSVSGTITFGFVPRSGEKITIIWVVSNL
Ga0180435_100693513F027166N/ATFLQYIHTGFFSDQNDIIRFQSDNDNVAYKTYEVTTIIGDGPNLNSPGHLEVKNDSDEWVITENGWKVGNTGTAKNISQLLCNEVIKGQLLPVKKFMQTTFIMNNPDTAFLQPHFAINYDSGYWIFQGGTYDLFKDAVKGVWWKVKED
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