NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0180435_10439841

Scaffold Ga0180435_10439841


Overview

Basic Information
Taxon OID3300017992 Open in IMG/M
Scaffold IDGa0180435_10439841 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025878Metagenome200N
F047990Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0180435_104398411F047990GGAGVSATIVQSGDYTLEIDTGAPVRGFRLDDAVRGVLDGTTFVLDGVTDFADVTDGTRSIRIRRGRRDTADQFGAGTMTFLLDDTTAGGVFNPFASNSPYYDPDNDKPGLAPMRLVRLYRESELLFVGRITDFDYGFGLDGD
Ga0180435_104398412F025878N/AREASGGLEDLEETADGAASAQKDLARSVNQVYEEVKRVNPQFERMLELLDLEDDVEQLRTEFDKYQETLSNTESSTREIEQAQRNLTRQILETLAAHGLLKLAFEENLMIKINTAQLDAAYASAMRVLNAFQQMQAISSGAAPGSTYVPPREELGFLSAPPVATTTITPVASITRAPSGAVQNVTVNVNTPTPTEEIGKVVVDSIRKYNRTSGSSAIGVLRL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.