NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180435_10575056

Scaffold Ga0180435_10575056


Overview

Basic Information
Taxon OID3300017992 Open in IMG/M
Scaffold IDGa0180435_10575056 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)944
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049303Metagenome / Metatranscriptome147Y
F091957Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0180435_105750561F049303AGGMQTLLNDPVRVLAVIAAAAVLVVPYLPAIAKRLRAAWASLPTVPQPSKDGIGVSDLTMVLDLANRLRLDGHEKATELAKQLLDAML
Ga0180435_105750563F091957N/ATMRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHQLPKRHNRSLRRKPDREPEPSKAEQRASEGSLDLAPRVAKRAAAVRATWSENIRQHRHYSSPSVFEVPILQVEIEPEEDMDF
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