NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187823_10001903

Scaffold Ga0187823_10001903


Overview

Basic Information
Taxon OID3300017993 Open in IMG/M
Scaffold IDGa0187823_10001903 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4776
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F020070Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0187823_100019036F020070GAGMPDSNNFGRSALTALPSADRGRVSRVVAFGCALVVTGAFCFCPGVFAQTSDSPTSEEPTRQWTATTDLKSDAQSPQRTRVRIVESHSQNGDRKLDKRSVEIRRTDGHFEPYQEIESETLSIDASTVRTTMRTFAWDVNGRKALVQVTEEERHTSPEGGSSVLRRTSNPDVNGRLQPVQREIVETKKIGDDLEETNTTVMLPSVEGGLAPVFKTQETRKRVANDTVESEKSTWMPDFNGKWQLSETRQATARLEGTNRTTEERVSRLDSEGKLGEISHVVTRESESTPGEKHSVVETYSIDVPGTARDGRLHLVERKASTESSSSTGERTTEQKVEQINPGDPTSSLRVSVLVDGRVVPGPSGEQSTVPIRARDVNGKFGVVSVDTTKADRIPTLQLQQTPAENQQ
Ga0187823_100019037F001643GGAGMNIPTDTLVDMLYIILADDFSITANNVAEIEQIQRELQRRGGELC

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