NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187816_10042043

Scaffold Ga0187816_10042043


Overview

Basic Information
Taxon OID3300017995 Open in IMG/M
Scaffold IDGa0187816_10042043 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1889
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0187816_100420432F006683GGAGGMNKPDRADVRQVNVKVNGITFESVRVRHDLGANDFDIVIDDPHIGRFALTPAVPNLELRDENSDWRQATLDEWKKILADDGELAEVDEEPQALEIAGRESFNRLVAEGEHIMNAEIALFNAGIAFLQLPFQQNKFGSNLFMVLNVPKAKACLQRAGFQAKFDSETVLFDGCNGQAVQLLQGKYRLPRTKS
Ga0187816_100420433F015081AGGVHPYYSREEEISVEDLIEEQQKLAHSKNPFERVVGSLCISAILKNQLMGLPNRTIGRLMTDYVWIDLNVLGPESVIVEVASERLIEKYETSLVCPECGAELRRAYE
Ga0187816_100420434F004185GGAGGMSLQKEFIRDGKRQISGSVTSGYVGSFETIVRDEQNHITGSTSERFNTTRDEHDSLVSINSPDPGLLIGRKK
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