NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187891_1017258

Scaffold Ga0187891_1017258


Overview

Basic Information
Taxon OID3300017996 Open in IMG/M
Scaffold IDGa0187891_1017258 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3515
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F029187Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0187891_10172583F002004GGAMRKIPNSPRRLDEHISRALNKIRKPSTAEEITELLNRDLEIEDRPFQTKEVAERLRNTGDTALTLYWSRTRPRR
Ga0187891_10172584F001010AGGAGMIEMQNTGDARARGEIVAVIEHVLSDRPGEWRVSIVGSRANDNWEMKVEGPEGFERSYTLIGSTGEHQPVAIGRLLLKLLPASRT
Ga0187891_10172585F029187GAGMRALGKGKGCDIGYALAISSCEGANSVETCTVTALDAITAFAVPNPNSSSQSRRFFPVWLLFGLPRRADHSAYFGLAKV
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