NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187815_10026571

Scaffold Ga0187815_10026571


Overview

Basic Information
Taxon OID3300018001 Open in IMG/M
Scaffold IDGa0187815_10026571 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2461
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005680Metagenome / Metatranscriptome393Y
F010361Metagenome / Metatranscriptome305Y
F010498Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0187815_100265712F010498GGAGGMRHEYTDKHQKKVFEDVLTERRYQDRQWGHGIDDTKNTPWMWTAYVCSYATKWMKDPFRFKREDTDEFYDRMIQTAAIAAAACESVLRQRDMNGKTFYEPN
Ga0187815_100265715F010361AGGAGGMGTLVFVCPTTGHEVSTGVEVDRSSFKSLPRTKTAIFCPRCRKNHKLSVIWAWLANEIREAPDESPCTKPAASMVCP
Ga0187815_100265716F005680AGCAGVRGGDIIVDLPGTNYTITYHKPAVSSQLLASYLSVKDDPRTELTQAEFLARAWRLANDKARELGWIA
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