NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187868_1010707

Scaffold Ga0187868_1010707


Overview

Basic Information
Taxon OID3300018002 Open in IMG/M
Scaffold IDGa0187868_1010707 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4803
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032376Metagenome / Metatranscriptome180Y
F101583Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0187868_10107071F101583N/ATIHGTYDENGAGKVLLGNTLTATDNGVGADVYGRGSITGFTDPNNGNAPISLVYYIVGSEVLRIIDVDFDDALAGSAYGQGSATSFDSTVLSTDVFGILDNTEDELFAAAGQLVAANTAVGTFSATFTGEGDDDELGNVVATGTPGGVAGNYSFSNTVLGYGSMTGITGLGSIHKLGLYATDPTLNLLDPNNTKAANLGAALVLELDDFAQGTGIVVPQGTIASDGSDLNHSYGFGAQAFVDNGSFPSGNPGWEFDFVGQGTFASLVFTTGGPPTPVDISDPYASFVTGTPDEYTAVPIAGTAAAPDAAGRYTFPSATPFAVGPVGGADGPTKDFTVVVYEAGPGLLFSIDEDESSEWLGTFQEMSAGPLKAMHVKRGPLSQEPIETETLTSRQFGGCRQTGHHVFGRKITSR
Ga0187868_10107072F032376GAGMPGDPHSGSQVWKAPNREISEPGENRGKVIAHRDLQPTAAFHDRENRRDLWSRLGAAYVYPVLSSIEIFRY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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