NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187876_1012273

Scaffold Ga0187876_1012273


Overview

Basic Information
Taxon OID3300018003 Open in IMG/M
Scaffold IDGa0187876_1012273 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4421
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000275Metagenome / Metatranscriptome1391Y
F068013Metagenome / Metatranscriptome125Y
F071728Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187876_10122731F071728GGAGGMNRPDLADVRRVHVRVNGITFESVRLRRSSGANDFDIVIDDPHIGRFALTAAVPSLELRAEDSGWRQVSLDELKKILADDGELAEVAEEPQASAERESFNRLVAEGEHIMNAE
Ga0187876_10122732F068013GAGGMSDKHKDERFEDRLVKCRDSVLTAWACAALLRPDLSPAGKEKLAKKILKMAESEDHRMGITPAQAQEIVLSNVQCIAKNCPLLIFADPLARELNAFFHEDN
Ga0187876_10122738F000275N/AMSGDRRVSARKRRTRAEVQQLVAEFVSSGMRRSEFCHSRGLSFSTLDRHLKKRRWKRRRRPVSSAGRLVKVELAAKESPTHLAASCGLAVMLPGGRRIEVHPDFDSNTFERLVSVLERV
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