NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1000439

Scaffold Ga0187865_1000439


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1000439 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58004
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000873Metagenome / Metatranscriptome851Y
F009823Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_100043929F009823GGAGGMRPYLVLTAVVLMAAAAFGQQPFPYAGGCLYGCGPFIPLVTTPMVSLQTVSPNPVGASNATTGLIAGATNATLSQIEGSTSSVYTVPVWYQGGGAAIMTPQVHLSPELLGREGHVMHQAMREERPREEHGPRAEARGGWTYFTGPEHTASAVQAASAAKGFKKAGHVYNNDDVTRQNDKNGTVKYAGKTEKM
Ga0187865_10004396F000873AGGGGGMKDIHEVLRRKQAQYTQLGKQIEMLQQAAEKLREVAPLLAENDNEDDSAVLTEVDDENSNAMAAKASAQPSPAASKPGRSVTPRWP
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