NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1127549

Scaffold Ga0187865_1127549


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1127549 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)909
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005354Metagenome / Metatranscriptome403Y
F089777Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_11275491F005354N/ASAEDATRFLHQACRGLPNLSNGKALAQHTAPVAEPLEKDDAFYMAVFEHALAFFGSRILHPARPALRDSDIAELFDVTREDLEHQTSLPFADAVEALDFLIEHRAHDFRDNHRSERQSSAPESLAEAPAFTGRKYEYVAEQLGYLAGNDIYDAYIEGRLTSAALRKLFLTHIEEPGVAREAYVQLRTRLRNGQRT
Ga0187865_11275492F089777N/AAVATKIKEVLTLDRPFVKKTAWVGTENIPHAFMESFHIFSQREIVTFKTREEAMDWLAGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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