NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187878_1066604

Scaffold Ga0187878_1066604


Overview

Basic Information
Taxon OID3300018005 Open in IMG/M
Scaffold IDGa0187878_1066604 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1559
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F007120Metagenome357Y
F015428Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0187878_10666041F003859N/APGRSWPGANLYKSLKLGWRWRQLRWAVVAASEAAQGHEANGLPPGSRVFQTLFNEVASKVQEYSIESGDPLDTLKARLPALCALERLANPAPTVPGNKAGLTLGILIAAVLGPIGIGALIGLGTGMAHWIAHLFG
Ga0187878_10666042F015428AGGAGGMTGILELFALVEIGSGIGFLATWRNRLLASKVNYLPPPHNKKSPIDKLVRAQTGPVITRQDQLCVKLADGLTVLVRRLVMLDAFRQLMRALALPNSPLRRRLRGQRRLS
Ga0187878_10666045F007120AGGAGGMKSLIMTLSAACAVVAGYFGGRYFTRRDLGFTPASKYVRRLAENLLHTELTAARQAE
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