NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187804_10041543

Scaffold Ga0187804_10041543


Overview

Basic Information
Taxon OID3300018006 Open in IMG/M
Scaffold IDGa0187804_10041543 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F050089Metagenome145Y
F073812Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187804_100415432F006757GAGVLPPIKTKLRDALLSLAAYKDIPTQQLIAAARALPGGTKVHCPDRLTAIVLLLGTRLVEL
Ga0187804_100415433F073812GGAGMTDPRQELESALLPLAWILNFIWGTIQLMFWFFMLPFLIVCWCFYHPAEARVYFVSAIPLLWNGNWATRGILVFFVLLIASLFSKTMHKICWGTVKLALVAGLIWYIYMIFKLA
Ga0187804_100415434F050089AGGMPWQVFTFDAPPGREMCDFCSASPTARLYACRNFIVPRTKHAVFQHESIGAWAACDRCAVLIDAGHWSQLTDRAFRRFCKKHGVSRYEEFEVREQLREIHQLFKEHMIKEA
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