NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187805_10116252

Scaffold Ga0187805_10116252


Overview

Basic Information
Taxon OID3300018007 Open in IMG/M
Scaffold IDGa0187805_10116252 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1212
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F050089Metagenome145Y
F073812Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187805_101162521F006757N/AMRDVAVLPPVKATVRAALLSLAAYKDIPTQQLIAAARALPGGTKVHCPDRLTAIVLLLGTRLVELN
Ga0187805_101162522F073812GGAGMADPRHELESALSPLAWILNFFWDTIRLMFWFFMSPILIITWCFHHPAEARLYAVSAIPLLWNGNVGTRGLLVFFVLLIASLFGKTLHRICWGIIRLALVAGLIWYIYMIFKLA
Ga0187805_101162523F050089N/AMARQVFVFDAPPGREVCDFCSSSPTSRLYACRNFIIPRTKHAAFQHESIGAWSACDRCALLIDAGHWSQLTDRAFRRFCKKHGVSRYEEFEIREQLAEIHQLFKEHMIKEA
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