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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018009 Open in IMG/M |
| Scaffold ID | Ga0187884_10000057 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 112116 |
| Total Scaffold Genes | 106 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 92 (86.79%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001742 | Metagenome / Metatranscriptome | 643 | Y |
| F002102 | Metagenome / Metatranscriptome | 593 | Y |
| F003000 | Metagenome / Metatranscriptome | 514 | Y |
| F006318 | Metagenome / Metatranscriptome | 376 | Y |
| F010059 | Metagenome / Metatranscriptome | 309 | Y |
| F012478 | Metagenome / Metatranscriptome | 280 | Y |
| F030862 | Metagenome / Metatranscriptome | 184 | Y |
| F071296 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187884_1000005710 | F006318 | AGGAGG | MWRQPPIWEPQGTKFRPYSIITLIFFYIGKFFGRLFRRRH |
| Ga0187884_1000005715 | F003000 | N/A | MKANTQLDEMHDRLIEFHLRGPKDRIGDVLLRWVEDPLKPRDERGRFRVNPILLLLAIVFALVFGTFLFFSMVQL |
| Ga0187884_1000005718 | F002102 | AGGAG | MSKDEQENRLKRRSGALDKFGPCGESGPIDDRNEYEQRLNCLPAEQKELAEESTRFADLCQYFSQQKMDIPPSVVERVGGVSKLPVPDRIRAMKDINRELMEYLNDVGQDPGIRQ |
| Ga0187884_1000005721 | F012478 | AGGAGG | MMSQSRGAVSFEPLFTAEEIGLGKEAHVEHVMKVFVTLGEGLASRWIEMPRGVLLLQTVPDDPASGAIYLYDRDLQVFYFVVFDEGRDDSLTTAEFDELVAEYNLVSWTAHPALLRKAIGKTAMA |
| Ga0187884_1000005725 | F001742 | AGAAGG | MPDNKTRSRLRNRQKIPRIGSKDAARVLAQCEHLLNNSPVFAENMRQVGFARFLAPLHEQILELAVQPDSWGQRTRARLIAEIFASLRGIPAEQASVEEIAHVSNVVVPCFLLELGRRRRHIEIEFPADPCYSAARFGLRVGPSSPNHFISSDELIRLVAEAGEELVGLCYFGDQQSREAIERWLARTCPTVDSTTQPRRSSPSEKKH |
| Ga0187884_1000005744 | F010059 | AGGCGG | MVLSLADAVAMFNKWKEDSAEVLVVIESPFQQSRRGILEQGIDWALGLQGQVSVASIDPTKKGKKAGTVVLQAPAGNLSLSIGLCTFVYEEPREAKPVVRAEAEDTTVSALSVFFPSNEVFVFYELREPIGTESLPGWSTI |
| Ga0187884_1000005758 | F030862 | GAGG | LESRNLGPEWVIAGPDGEARHRTASHEQLLDAARIAWPNALSYARQTNAPDCDSIATEVWEELLRSVLRTMRRIGNLHHVSNLESYLIGAFHHRFQRALAKERQYRQRVLLTESVEELERIGRVQDWKSAERLDRDLQVQQTLKLLDPWTRRVWNYIKYGYSIKEIARRLDLTESQVEFRYRRRLIRLRDYLRRRSGSAA |
| Ga0187884_1000005759 | F071296 | GGTGG | LINFLRKKRQRSDNGEFLKLLSRELAKGFPNPDRAGCPDSEFLQRVARHQVPISEIDPWIDHLGSCSECFGEFNRLKVDSSALRQRRLFLYAAVACMVLASSGLLWRQLSKVREISTPVAGTSETKPAVTRGVSSGQKDVADTGADRKPFEVTLNITRSATRGENGTNDRQIFRLPARLVACRMTLPLGSSEGLYYVRVQRAAQSKVLKTVQRNADVNNGDLRLDVELDLSNMPAGQYLLSYRHAGESWHHVPILITNFTD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |