NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187810_10025884

Scaffold Ga0187810_10025884


Overview

Basic Information
Taxon OID3300018012 Open in IMG/M
Scaffold IDGa0187810_10025884 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2132
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070445Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187810_100258841F070445N/AIKFEPKLRITRQDGWTYLELLLVNRSSWTVWIEEASVVLTDLDANLQTGVPTGQVIHTIRQNVVPADALSVSLARAVYDAAGRPQGPYSCLVSTNVRYRVFDEWRNTQLNACRVEMAALTVLGLRREHWYRRKIKQIKGRGELRVHQHKG
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