NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187810_10032459

Scaffold Ga0187810_10032459


Overview

Basic Information
Taxon OID3300018012 Open in IMG/M
Scaffold IDGa0187810_10032459 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034101Metagenome / Metatranscriptome175Y
F045670Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0187810_100324591F045670N/ATGSRPVEVFVPDLVGGEIELDEEGRVFLVEQFPNGDGSTHERKIFLLQISKKGEVLVDGKAVDRVQPFPMRYGSGTIRDGKLVFNDIRQRTTVIKRATTTLSKPCDDIRGEKPSSSEASTARAQGETRS
Ga0187810_100324593F034101GAGMQVSSHEAHAWIKESLGQRSDIGLTKAIVNTLFDPPSPFDPRARRKPKAGFVIGALLCATAVVCFCYFNFAG

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