NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187810_10071205

Scaffold Ga0187810_10071205


Overview

Basic Information
Taxon OID3300018012 Open in IMG/M
Scaffold IDGa0187810_10071205 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1336
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011360Metagenome / Metatranscriptome291Y
F014038Metagenome / Metatranscriptome266Y
F020044Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0187810_100712051F014038N/AMKVTLEDALSLLSKYAEERTPVLGILGTPSVSVARVVGTIRVSTVGVEPCLLIGKEDSESDQIRFWLSDCEFAYGDFRDEESAAHKFEGFLAVGSKKGDTLSLFEVKS
Ga0187810_100712052F020044N/ALVVNLRCNLLSLLKIHRPDCDCNARKTNGDEIRKRLDELSGRTQPRSLNTHSLNNGDHGEAVGVFDSKPAEVLASPPISLKAQQQQQRKIA
Ga0187810_100712053F011360AGGGGGMATYGEWIKKSALIGALLGGDAGFFYGAYIMPTSLTLGWTDVLDAVGSVVAVLVFAVILGSLCIAIGGLAGLVLGVVASPLSSFTKKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.