NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187810_10122895

Scaffold Ga0187810_10122895


Overview

Basic Information
Taxon OID3300018012 Open in IMG/M
Scaffold IDGa0187810_10122895 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017887Metagenome / Metatranscriptome238Y
F064901Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0187810_101228951F017887N/AVAEFTRPSSPSHGFFDPLRNLPHQVRIADRRTAGEALDELLDDLDARLADSDGAARPERFFLIAGLHRWHELLAEGDYGRPSETSARLVRLADKGPDAGLHVVAWADGYATAERALRRAGLAHFGLRAVLRVLSPAESDSLLGVSAGASLDDDRALYRDTEWPAEQVEKFKPYSVASLYSFARAAFGSPA
Ga0187810_101228952F064901GGAGMTTQERTAVGASPYLSLRQAVRPAIFAHFLLAEDHERAGQLAAECEDLLFLTRELLKAAGLAGIVGAESLGAEPPGLTGLTGLTGPEEDDGDGRQAQLLGAYAEAGLLWAKVVGSTMALAGGLLDRGDWDGVRRLAGFLADAGEDGAAEEVRI
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