NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187810_10134862

Scaffold Ga0187810_10134862


Overview

Basic Information
Taxon OID3300018012 Open in IMG/M
Scaffold IDGa0187810_10134862 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007488Metagenome / Metatranscriptome350Y
F018787Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0187810_101348621F018787GGAGGMGRGAQGQTQSLTDQQLNQTNAMNQQLLGQQQSLGNLLTPQYQSMLNNPGYSAADKAAITGQSQ
Ga0187810_101348622F007488GAGMEIRNYEEKDLEALKAIHARQGFGYAFPDLGNPLFLTKLILGREEGGKGIAGAALLRLTAEAYLLLDPQAGSPRGRWQGLLELHEATRRDALARGLEDVHAWLPPEIAKKFGKRLTELGWIRDDTWTPYCKRLR

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