NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187866_1059138

Scaffold Ga0187866_1059138


Overview

Basic Information
Taxon OID3300018015 Open in IMG/M
Scaffold IDGa0187866_1059138 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y

Sequences

Protein IDFamilyRBSSequence
Ga0187866_10591381F002761N/AVIKSFLNLCLILFLDMLAYMVAIFAAGAVFWSMVWAGLGKLNELARFVGFKRYRPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESWFS
Ga0187866_10591384F005112AGGAGMSLVVKYKLFWAACIAALCSLAFWKNSKSYPGKSKLWRLGKSAIDAGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARIDKRDRNKLAKAA
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