NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187880_1288830

Scaffold Ga0187880_1288830


Overview

Basic Information
Taxon OID3300018016 Open in IMG/M
Scaffold IDGa0187880_1288830 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014038Metagenome / Metatranscriptome266Y
F020044Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0187880_12888301F014038AGGAGLLEANGACCEYPDAISQAMKVTLDDALSLLSKYAEERTPVLAILGTPSVSVARVVGTIRVSTVGVEPCLLIGKEDSESDQIRFWLSDCEFAYGDFRDEESAAHKFEGFLAVGSKKG
Ga0187880_12888302F020044AGGTGGLKCYLLSLLRIQHPDCELCNARKTNGDEIRKQLDELSGRTQPRSLNTHSLNNGDHGEAVGVFDSKPAEVLASPPISLAQQQEKKIA
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