NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187872_10013512

Scaffold Ga0187872_10013512


Overview

Basic Information
Taxon OID3300018017 Open in IMG/M
Scaffold IDGa0187872_10013512 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012141Metagenome / Metatranscriptome283Y
F047844Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0187872_100135123F047844GAGGMRSLLSVRGVLAAAATVTCLGAALWAQDPENPNSLGDVARQTRAQHASAPEDKSSKAQSLVDEMQQEQEAAENAPTGFKSYNAGDYRLLVPFPFSLEGRDNGGAVLLGSRLGITNTEVLAGTPNPIPANLSDNELFNLARGLAGQHGQTPYCSAIKLGQRKAFRCGWNGSPYLLGHEVWGSMAFVVGSNSLIPVMCVSPDEFQCLGYDKFGYHTCNNRNPSWDEVQKTRAAINTRFRDEVTTGQMCDQIIYPSIQLKEDIVVHPASIPEGKTPVARVSVPQDRSLESSEPQTPSLAELARQTRQAPHDKAQATLDNAEGSSAPRGFQSFSLQFCLNPQQCSEASIDIPEKAEVVSRVNGQHIFKAALDGEWVMLYAGPADVNAPYRSLTDPDYIRIRDLANSNGWSREKPDGVSTQDLTIEGRPALMTRFRYQRDQKRWWIGERVLIENRGAQFLLGCAAPEEHFADAEVLCTTLVNSLRLP
Ga0187872_100135124F012141GGAGMGNRYWFWVLVRLAVGVAIVAWAATYLRPGGGEKEFQKTLDALKQVHTFRVASTATPGTQHNEMLWEVDCNRDLLHYQWQVMDSSRPETGMARDEVHVANLEFDHENDGSWSKPRYAMRGRSAKRYCDDLAQGADSSLLPPIATMIKRAILQKGDKKTVNGVRCREWLVTMKGAPNGLEHDTVCLGLQDHLPYEMTVDWEHSRSSFSDYNSPIQFDVPESVLQSANASTGSN

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