NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187864_10097332

Scaffold Ga0187864_10097332


Overview

Basic Information
Taxon OID3300018022 Open in IMG/M
Scaffold IDGa0187864_10097332 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004412Metagenome / Metatranscriptome439Y
F047830Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0187864_100973322F004412AGGAMEREPSNAEQALPPEQAAVKAAILAECDRLTEAGITFVAVHFDGSGDEGVNEDLKCYATEDYAYEESEIQEANFSCLQEHFETLVPYGYENGCGGFGDVILNVKTRKITVERSDRFEDYTTSTYEV
Ga0187864_100973323F047830N/AVPKLDGWATPEGWRRGLRPYAEGDSKPVERTTAGTDGHGDGHPKGNGASDPGASLVREIEQMERALGKRMYRGLLKTLARVWNPKDIQDPAIQQKVLAHMQAAERGFRRLDAALERVGPEALTQILRSLKLQSLDLVDNLQALREIVLALEIAAEGKAVKQ
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