NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187889_10028664

Scaffold Ga0187889_10028664


Overview

Basic Information
Taxon OID3300018023 Open in IMG/M
Scaffold IDGa0187889_10028664 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3194
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007120Metagenome357Y
F075582Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0187889_100286641F007120N/AGNPIMKTLIIVLSAACAVVAYYFGLRYFSGRDLGFTPPRKYVQSLAKNLLHTELTAAREAGTTPEATTEQAA
Ga0187889_100286646F075582GGALTRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENVPHSVDDFDGVIKEGYGKGEKRLIYSGTGVIKVGGSRQLGKINVHAHDAERAGFHYDFVAEGIDPHTKSFEVNIPNSVLKGRYAFRQAFEENRYLVVRLKDNSVLVAKPDIHLKPPEFLKTIRQSDRPVSVEWKDDGSLANVAIHDLRAFYRSHRPEGECYYDKLPAIEDVSNHSPV
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