NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187885_10104609

Scaffold Ga0187885_10104609


Overview

Basic Information
Taxon OID3300018025 Open in IMG/M
Scaffold IDGa0187885_10104609 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F002408Metagenome / Metatranscriptome562Y
F005213Metagenome / Metatranscriptome408N
F036729Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0187885_101046091F036729N/AMTNAEAGVVGAVLGFGLIALLLYLAVDRYHIRKEQLVEAGLYLFVIAAAVIAPV
Ga0187885_101046092F005213AGGAGMASSATKMANEPEQTGEERQPDVQLQDVLFSALVTSVCYWTTIFLLAIVGAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALQGQRKWKMLMTAASLVAVMGCGKVLEIYLAPM
Ga0187885_101046093F001473N/AMETEYQTVGQMYERLRLMIRQRNDTGFRLAMTDAVLEPRNPFEPASKRRPKSVVAITLILALVLALIFLYFSFHHAR
Ga0187885_101046094F002408N/AVRLVGGAAAPKANLGVLIRDVYRRQDEVFVRYSIENHSTQTLRAGAPAVVSLTGLKFDRSLWTFQNAQLGIEYESRLKTYDAPIPVKIRQCDPGVAEVGPGGTRIGLIALQLPAVNPDAKKTQPTVLKILFPIDRAGNLTATLVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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