NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187857_10002894

Scaffold Ga0187857_10002894


Overview

Basic Information
Taxon OID3300018026 Open in IMG/M
Scaffold IDGa0187857_10002894 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14641
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F004817Metagenome422Y
F007120Metagenome357Y
F020126Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0187857_1000289412F007120AGGAGGMKTLIITLSAACAVVAAYFGVRHLTHRDLGFTPTRKYVRNLAENLLHTEVTAAQEAGTVPEATSEQPA
Ga0187857_1000289415F020126GAGGMNRLVNLALSVGETLVHEAARLLFGIALGWANELLGTPQPLGTQQLALNRALQKKSVDGALLEGSRTGKEYAKFALKKGLPTDQRPST
Ga0187857_100028947F004817AGGAMPNSAAVVQLPEILRNKSSHLVKLAGKVDSFSLLLRDTPEGELKRSIEEQSHAMVFATRKEIRRYCPRYRSLPGEGILDFNTDCNSGQLDPGDLGKAPPPKRGSLCETCFFFVGIPEEQVSQMTVSPTSQDLVFAV
Ga0187857_100028948F003859AGGAGMDELKAERSSTPAHSWPGASLYDSLKLAWHWRRLKWAVVAASEAAQGHEANGLPPGSKEFKTLFKEAACKVQEYSAESGEPLETLRARLPALCALERLANPTATMPRNKAGLTLGILTAAILGPTTIGALIGLGTGMAHWIAHLFA
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