NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184605_10000105

Scaffold Ga0184605_10000105


Overview

Basic Information
Taxon OID3300018027 Open in IMG/M
Scaffold IDGa0184605_10000105 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22413
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001677Metagenome / Metatranscriptome654Y
F006194Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0184605_1000010523F006194N/AMTSPGPKRAGDSGAKRNEERAARNARSKAHINLAKALASVFSAGVYTKEELQAAVCTYVSEMKDGGETGEAVVRAAQGLVNEVGSRFPSSQRTQVVLADMVTWCLAEYYRESA
Ga0184605_100001054F001677N/AMSRLTIAASLLLAIPAPSFAQQAVAQPAFNDRTGLITAALFEDKDAAAMTVGLAPLSRATIAKGDREVRIWYSSFGNPQFLVIIRQSGTSTTGRLLLWWDQYYLSEPEKADKRVDNFVRATYDCGPILKRDSHYIDDRWVSSVCEANMKGSPDWKSFLSEVESHALPQGGATAPAEDSNQDQNWGITVERKSGAGYGVSHYHTALTIAAPEPGRGPKLQDMVNALAATAKRQSAAAQQR
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