NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184605_10376393

Scaffold Ga0184605_10376393


Overview

Basic Information
Taxon OID3300018027 Open in IMG/M
Scaffold IDGa0184605_10376393 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028185Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0184605_103763931F028185N/ADITTPEQIIEAVEAMGTISSGKFQAGGAVSFSPDGRFLISSHVLLKKLATEVWDTGAGTLVRGNDDASLRDRGKPFFSPDGRFRAAPFFGMKEFYTTANAVNVFSDVYKDVYKQRIDLYDGQSDKRLRELDGGKAPVMGIVASAGFSFDSKLIAMTGFEKKERSILIYETENGRKVNSFQINDDEQNGAVTTLCLSADGRLLAAGYAAKVDI
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