NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184608_10006717

Scaffold Ga0184608_10006717


Overview

Basic Information
Taxon OID3300018028 Open in IMG/M
Scaffold IDGa0184608_10006717 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3770
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0184608_100067171F000825GGAGGMRRWMSAALAGAALMMTAMPAQAAWKSYINRQLGFSFMAPGEVKTDVGNFRGAIAGPRQTIVYRSVEDNIEYKVTVMSFLQAQAEGATLLGERQYMFQDRKTVLMDTFSRVGLGEDAVYGRKIVVDLPDNKGRTTGVFYFTKGRLISVEATVLPAKGSFASPDPDRFIDSIAFVLSHTEPGAVELETPKLE
Ga0184608_100067172F000823GGAGGMRLTALAILVGAALMATPAMAAWRGYISHPLGFSFSAPGELKVEKGTYRGAVAGPRDTLVYSFVDDNIEYKVVVIDMSDKANDAATLLGEAEYIFQEDKKVLMDTFGRVDRQFGRKLTIDLPNNAGRATAAFYFINGRIISLQATVLPANGDYDSPETARFVDSIAFFTVRAPDDAIELPAPPK
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