NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184608_10011537

Scaffold Ga0184608_10011537


Overview

Basic Information
Taxon OID3300018028 Open in IMG/M
Scaffold IDGa0184608_10011537 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3024
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018834Metagenome233Y
F035249Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0184608_100115374F018834N/AMKHASYKDYVITVTANNENGTWRSHVIISWYAGKFEVHDEVTFTTETGAEEHAIELGKYWVNNRLQSMQG
Ga0184608_100115375F035249N/AMWKESHHGQPLKGIIWFALAIVGFCAVIAVLAGYVQNARSLEKISHRVEAVWLSSKDL

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