Scaffold Ga0187869

Basic Information
Taxon OID	3300018030 Open in IMG/M
Scaffold ID	Ga0187869_10001622 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19716
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (86.21%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

19716

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (86.21%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187869_100016225	F003859	AGGAG	MDEQNTPKGTSLDRTSTPGSSWPGANLYRSLKLGWQWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTESGDPLNTLQARLPALCALERLAYPAPTVPRNKAGLTFGILSAAVLGPIGMGALIGLGAGMAHWIARLFG
Ga0187869_100016227	F057060	AGGAGG	VNYQHLHYQFPAEPFQRWHVIEDRSLPHPLRFRHPCKPAEKPDPKVNFGVSELSARLEHAGVEYIRIALGNDAKSFDWAFCMISGALPGVEVPGDGHWYPVIPWVRDDGFYAVGMREPMPFRDACHLFGFDIPAGKPSVPKRIKRDVARGLTSLFGELIETRQLNQWDLLHTVMLADGKTTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVQIGDLIQITGAMPNGQIKANCLIWDIEHDLVVWDVKQELRAWQGQIYLSVLNELHGGPAHLDVQTASNLDLAKVRDHKLIRYLCQEYACDVFDLMRDDERVKEEIGFYNPASWADEDGNPVLSENRWKLWRMYAAGLPAMQFRNCRDAFYRTQMESPENSDPDRFRIRFREPQDLMTVKADELAGAAVRRYLFPEPFVFDKQGYPHWERSTLPNVDSVYLGGFDGEFISLRNPNASHRESGKLRGRRLQRFAGIDRGAVMFVHLGFAASLEGAPGMAKSFNGADFDDSVLALLDPEIVKHWKTLPEYPWVMATPTEVKVIDDGDALFDRHPKVQEYDDYYVTCMLNDAKRGQTGIGYVVNAITWFNLLWLNRESIVAELRRMQPSSQVAAAIHWMEEELPRSRMPMVASSLEEIIDAIKLNGSSINWVSGVITEFRNSCPVAPKFWWQGGYQGQGRIPRDRLENGNAPIPVTTPMDVAREDWIELFQKARWFADKESWKRCWRVPPEIRSFPTRPEAAPAARDFWLFYNRTREAKKAEFLKAGKDHRGKKVTSEQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDISRAAGVARRYVPLTWESERVRADYGDLSLDIIVEDTLVRISGSTSNSTSWIGIVDLPDGQYRVEHGLVVTEDTSEGPPQGPAVALLAVNGFEQRLRDDRLKQEDRQRIEEELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGTSEPLGWISREHLPLVRSELTGVLVSGGQYTLKVLCPIPVQGTHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187869_10001622

Overview

Ecosystem & Geography

Associated Families

Sequences