NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187867_10000363

Scaffold Ga0187867_10000363


Overview

Basic Information
Taxon OID3300018033 Open in IMG/M
Scaffold IDGa0187867_10000363 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40635
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012243Metagenome / Metatranscriptome282Y
F078993Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0187867_1000036320F012243N/AMNVLLQYTPLGLLAVLLGVLLRRRAYTTSPWFFVYAIFGVIAGLARFVAHSYATRYYATYWVTEAGYDLLGILVMYEVLRAVLGNLARAWWARLVFPTILLAGAGMGWARTDVVPARFSGIEFYIVVGEIAVRFVQVFVFAGLVTLVPLLGLRWRQYPFGVATGFGLYATVMLLTTTKFSDFGTRFKLLWGWTSIVAYSLAVLIWIWFFSVPQEIETLNTERSAPSPGDLKQYKDALRRM
Ga0187867_100003634F078993GAGMGTPKPCPPPKVVIKNGGSDEPAVQLKGDTTAEQASQQLYTTEQLTAATQENLKKLAGRQLSASQKEMVSQVKEFMEQSSKALAAGDLQRGHNLAMKAQLLSDELVKP
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