NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187867_10053860

Scaffold Ga0187867_10053860


Overview

Basic Information
Taxon OID3300018033 Open in IMG/M
Scaffold IDGa0187867_10053860 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2409
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010591Metagenome / Metatranscriptome301Y
F024934Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0187867_100538601F024934GGAGGMSENSEFAQRIIKMRIKYVLEKSQSQIVDEKKLRNIAAKVKEGESQSALAKDMQKLAITAIGKATPLLKDVTQLLLDDYLQTIKDITDEA
Ga0187867_100538603F010591GGAGMKINKEDIPVMLYCLQELFNEYGAEVTPTLLVERMERKIHRHVQMQSVAHQYTSLGFVTKRNNTLQKYCFIPNLELLAEIRAQFCKH

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