NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187867_10092344

Scaffold Ga0187867_10092344


Overview

Basic Information
Taxon OID3300018033 Open in IMG/M
Scaffold IDGa0187867_10092344 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011360Metagenome / Metatranscriptome291Y
F020044Metagenome / Metatranscriptome226Y
F084813Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0187867_100923441F084813N/AANPAEYTVNVHVSSSSIDIERGFQVLNVLIDGKKYELGSELRIGRLLALGDYKAKLVKDEHKTTYDSLQVYEFLFPDKKTRQFLLVGQTE
Ga0187867_100923442F020044AGGTGGVSQLRWKCYLLSLLRIHHPDCELCNSREKYGEEMRRRLEELNWRTQPRSVNNGVFDSKPAEVISTPVSLKARKKKIA
Ga0187867_100923443F011360AGGGGGMTTYGEWIKKSARIGALLGGVAGFFYGAYIMATNLTLGWTDVLDTMGSVATVLIFAVILGSLCIGIGGLAGMVLGVVASPLSTLHFRRSRYFSG
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