NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10001858

Scaffold Ga0187863_10001858


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10001858 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16555
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_100018583F073232GAGGMLAWNSLKWLLWIGLYLIPVVFLPWAISRTWVYQHGKELHLKPQQLFQRGELGLPSLILACSVIWNLLQSQFMPHTVALGSVIMGLSGIMAVSVWVETYCRQASGGDQRPERAWRDSRNLALLVFSMAAVLEILLDRFAKAVGQ
Ga0187863_100018584F008511AGGCGGVSAPAPALAAPAKTPRKIAVVRMADASGAVAVLSLLFGLLLVFFPESFPRMIVRSWEHAQLMPIMMVFTFLLDTCLYLRVAYLQSAKPRPAAAACLGSLPILVVGGLSILLRGALSHTLSAGLPNLQARLAEEILAHTYLGLVSAVFLPFLAIRLLQQLKAANS
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